{"spdxVersion":"SPDX-2.3","dataLicense":"CC0-1.0","SPDXID":"SPDXRef-DOCUMENT","name":"com.github.biojava/biojava","documentNamespace":"https://spdx.org/spdxdocs/protobom/3caf6065-be62-419a-8554-649302b91cb7","comment":"Exact versions could not be resolved for some packages. For more information: https://docs.github.com/en/code-security/supply-chain-security/understanding-your-software-supply-chain/about-the-dependency-graph#dependencies-included.","creationInfo":{"creators":["Tool: protobom-v0.0.0-20260224165546-4c4b0afb1d3d+dirty","Tool: GitHub.com-Dependency-Graph"],"created":"2026-02-25T01:16:01Z"},"packages":[{"name":"org.biojava:biojava-structure","SPDXID":"SPDXRef-maven-org.biojava-biojava-structure-7.2.5-SNAPSHOT-75c946","versionInfo":"7.2.5-SNAPSHOT","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.biojava/[email protected]"}]},{"name":"org.slf4j:slf4j-api","SPDXID":"SPDXRef-maven-org.slf4j-slf4j-api-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.slf4j/slf4j-api"}]},{"name":"org.apache.logging.log4j:log4j-api","SPDXID":"SPDXRef-maven-org.apache.logging.log4j-log4j-api-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.logging.log4j/log4j-api"}]},{"name":"org.apache.logging.log4j:log4j-core","SPDXID":"SPDXRef-maven-org.apache.logging.log4j-log4j-core-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.logging.log4j/log4j-core"}]},{"name":"org.apache.logging.log4j:log4j-slf4j2-impl","SPDXID":"SPDXRef-maven-org.apache.logging.log4j-log4j-slf4j2-impl-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.logging.log4j/log4j-slf4j2-impl"}]},{"name":"junit:junit","SPDXID":"SPDXRef-maven-junit-junit-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/junit/junit"}]},{"name":"jakarta.xml.bind:jakarta.xml.bind-api","SPDXID":"SPDXRef-maven-jakarta.xml.bind-jakarta.xml.bind-api-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/jakarta.xml.bind/jakarta.xml.bind-api"}]},{"name":"org.glassfish.jaxb:jaxb-runtime","SPDXID":"SPDXRef-maven-org.glassfish.jaxb-jaxb-runtime-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.glassfish.jaxb/jaxb-runtime"}]},{"name":"org.apache.maven.plugins:maven-assembly-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-assembly-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-assembly-plugin"}]},{"name":"org.biojava:biojava-core","SPDXID":"SPDXRef-maven-org.biojava-biojava-core-7.2.5-SNAPSHOT-75c946","versionInfo":"7.2.5-SNAPSHOT","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.biojava/[email protected]"}]},{"name":"org.biojava.thirdparty:forester","SPDXID":"SPDXRef-maven-org.biojava.thirdparty-forester-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.biojava.thirdparty/forester"}]},{"name":"org.apache.maven.plugins:maven-deploy-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-deploy-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-deploy-plugin"}]},{"name":"org.apache.maven.plugins:maven-resources-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-resources-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-resources-plugin"}]},{"name":"java3d:vecmath","SPDXID":"SPDXRef-maven-java3d-vecmath-1.3.1-75c946","versionInfo":"1.3.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"copyrightText":"Copyright (c) 2001 Sun Microsystems, Inc., Copyright (c) 2001 Sun Microsystems, Inc., 901 San Antonio Road, Palo Alto, California 94303, U.S.A.","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/java3d/[email protected]"}]},{"name":"com.fasterxml.jackson.core:jackson-databind","SPDXID":"SPDXRef-maven-com.fasterxml.jackson.core-jackson-databind-2.13.4.2-75c946","versionInfo":"2.13.4.2","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/com.fasterxml.jackson.core/[email protected]"}]},{"name":"xmlunit:xmlunit","SPDXID":"SPDXRef-maven-xmlunit-xmlunit-1.6-75c946","versionInfo":"1.6","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"BSD-3-Clause","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/xmlunit/[email protected]"}]},{"name":"org.jgrapht:jgrapht-core","SPDXID":"SPDXRef-maven-org.jgrapht-jgrapht-core-1.4.0-75c946","versionInfo":"1.4.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"LGPL-2.1-only OR EPL-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.jgrapht/[email protected]"}]},{"name":"org.rcsb:mmtf-api","SPDXID":"SPDXRef-maven-org.rcsb-mmtf-api-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.rcsb/mmtf-api"}]},{"name":"org.rcsb:mmtf-serialization","SPDXID":"SPDXRef-maven-org.rcsb-mmtf-serialization-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.rcsb/mmtf-serialization"}]},{"name":"org.rcsb:mmtf-codec","SPDXID":"SPDXRef-maven-org.rcsb-mmtf-codec-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.rcsb/mmtf-codec"}]},{"name":"net.sourceforge.jmol:jmol","SPDXID":"SPDXRef-maven-net.sourceforge.jmol-jmol-14.31.10-75c946","versionInfo":"14.31.10","downloadLocation":"NOASSERTION","filesAnalyzed":false,"copyrightText":"(c) 2015 Jmol Development https://chemapps.stolaf.edu/jmol/docs/index.htm, (c) 2015 Jmol Development Jmol, (c) Fujitsu MOPAC, (c) Zaval CE Group http://www.zaval.org/products/jrc-editor, Copyright (c) 1996,1998, Jef Poskanzer, [email protected] \u003ca href http://www.obrador.com/essentialjpeg/'\u003e JPEG Encoder, Copyright (c) 1998-2004 The Jmol Development Team, Copyright (c) 1998-2008 The Jmol Development Team, Copyright (c) 1998-2011 The Jmol Development Team, Copyright (c) 1998, Dean S. Jones, [email protected] \u003ca href http://www.junit.org/'\u003e, Copyright (c) 1998, James R., Copyright (c) 1998, James R. Weeks, Copyright (c) 1998, James R. Weeks et BioElectroMech. Ce, Copyright (c) 1998, James R. Weeks, BioElectroMech, [email protected] \u003ca href http://www.icon-king.com/projects/nuvola'\u003e, Copyright (c) 2002-2005 The Jmol Development Team, Copyright (c) 2004-2005 The Jmol Development Team, Copyright (c) 2005, Copyright (c) 2005 by the Jmol Development Team, Copyright (c) 2005 Miguel, Jmol Development, www.jmol.org, Copyright (c) 2005 The Jmol Development Team, Copyright (c) 2005-2007 by the Jmol Development Team, Copyright (c) 2005-2008 by the Jmol Development Team, Copyright (c) 2008 Rosetta, Copyright (c) 2009 Rosetta, Copyright (c) 2010 Rosetta, Copyright (c) 2011 Rosetta, Copyright (c) 2012 Rosetta, Copyright (c) Merck and Co., Inc., 1994, 1995, 1996, Copyright 1998, James R. Weeks, Copyright 2002-2003 The Jmol Development Team, COPYRIGHT HOLDER. Egon Willighagen \[email protected]\u003e","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/net.sourceforge.jmol/[email protected]"}]},{"name":"org.biojava:jcolorbrewer","SPDXID":"SPDXRef-maven-org.biojava-jcolorbrewer-5.2-75c946","versionInfo":"5.2","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.biojava/[email protected]"}]},{"name":"net.sf.json-lib:json-lib","SPDXID":"SPDXRef-maven-net.sf.json-lib-json-lib-2.4-75c946","versionInfo":"2.4","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/net.sf.json-lib/[email protected]"}]},{"name":"actions/checkout","SPDXID":"SPDXRef-githubactions-actions-checkout-4..-75c946","versionInfo":"4.*.*","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:githubactions/actions/checkout@4.%2A.%2A"}]},{"name":"actions/setup-java","SPDXID":"SPDXRef-githubactions-actions-setup-java-4..-75c946","versionInfo":"4.*.*","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:githubactions/actions/setup-java@4.%2A.%2A"}]},{"name":"jakarta.xml.bind:jakarta.xml.bind-api","SPDXID":"SPDXRef-maven-jakarta.xml.bind-jakarta.xml.bind-api-4.0.0-75c946","versionInfo":"4.0.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"BSD-3-Clause","copyrightText":"Copyright (c) 2003, 2021 Oracle and/or its affiliates, Copyright (c) 2009, 2021 Oracle and/or its affiliates, Copyright (c) 2017, 2018 Oracle and/or its affiliates, Copyright (c) 2018, 2022 Oracle and/or its affiliates, Copyright (c) 2019, current.year Eclipse Foundation, Copyright (c) 2020, 2021 Oracle and/or its affiliates","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/jakarta.xml.bind/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-shade-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-shade-plugin-3.2.4-75c946","versionInfo":"3.2.4","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 2002-2020 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-site-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-site-plugin-3.21.0-75c946","versionInfo":"3.21.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0 AND BSD-2-Clause AND BSD-3-Clause AND EPL-1.0 AND EPL-2.0 AND LicenseRef-scancode-public-domain AND MIT","copyrightText":"Copyright 2002-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-jarsigner-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-jarsigner-plugin-1.4-75c946","versionInfo":"1.4","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-project-info-reports-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-project-info-reports-plugin-3.8.0-75c946","versionInfo":"3.8.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-install-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-install-plugin-3.1.3-75c946","versionInfo":"3.1.3","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 2004-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-resources-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-resources-plugin-3.2.0-75c946","versionInfo":"3.2.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.codehaus.mojo:buildnumber-maven-plugin","SPDXID":"SPDXRef-maven-org.codehaus.mojo-buildnumber-maven-plugin-1.4-75c946","versionInfo":"1.4","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"MIT","copyrightText":"Copyright 2001-2008 The Apache Software Foundation.","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.codehaus.mojo/[email protected]"}]},{"name":"org.jvnet.jaxb2.maven2:maven-jaxb2-plugin","SPDXID":"SPDXRef-maven-org.jvnet.jaxb2.maven2-maven-jaxb2-plugin-0.14.0-75c946","versionInfo":"0.14.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.jvnet.jaxb2.maven2/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-enforcer-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-enforcer-plugin-3.5.0-75c946","versionInfo":"3.5.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 2007-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-release-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-release-plugin-3.1.1-75c946","versionInfo":"3.1.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 2002-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-surefire-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-surefire-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-surefire-plugin"}]},{"name":"junit:junit","SPDXID":"SPDXRef-maven-junit-junit-4.13.2-75c946","versionInfo":"4.13.2","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"EPL-1.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/junit/[email protected]"}]},{"name":"org.junit.jupiter:junit-jupiter-params","SPDXID":"SPDXRef-maven-org.junit.jupiter-junit-jupiter-params-5.10.1-75c946","versionInfo":"5.10.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"EPL-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.junit.jupiter/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-project-info-reports-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-project-info-reports-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-project-info-reports-plugin"}]},{"name":"org.biojava.thirdparty:forester","SPDXID":"SPDXRef-maven-org.biojava.thirdparty-forester-1.039-75c946","versionInfo":"1.039","downloadLocation":"NOASSERTION","filesAnalyzed":false,"copyrightText":"Copyright (c) 2008-2011 Christian M Zmasek., Copyright (c) 2008-2013 Christian Zmasek, Copyright (c) 2015 Christian M Zmasek","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.biojava.thirdparty/[email protected]"}]},{"name":"net.sf:stat-scm","SPDXID":"SPDXRef-maven-net.sf-stat-scm-1.2.0-75c946","versionInfo":"1.2.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/net.sf/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-surefire-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-surefire-plugin-3.5.2-75c946","versionInfo":"3.5.2","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0 AND BSD-3-Clause AND MIT","copyrightText":"Copyright 2004-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.logging.log4j:log4j-api","SPDXID":"SPDXRef-maven-org.apache.logging.log4j-log4j-api-2.23.1-75c946","versionInfo":"2.23.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 1999-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.logging.log4j/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-checkstyle-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-checkstyle-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-checkstyle-plugin"}]},{"name":"org.apache.maven.plugins:maven-gpg-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-gpg-plugin-1.6-75c946","versionInfo":"1.6","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 2002-2015 The Apache Software Foundation, Copyright 2002-2023 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.logging.log4j:log4j-core","SPDXID":"SPDXRef-maven-org.apache.logging.log4j-log4j-core-2.23.1-75c946","versionInfo":"2.23.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 1999-2005 The Apache Software Foundation, Copyright 1999-2012 Apache Software Foundation, Copyright 2005-2006 Tim Fennell","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.logging.log4j/[email protected]"}]},{"name":"com.google.guava:guava","SPDXID":"SPDXRef-maven-com.google.guava-guava-33.4.0-jre-75c946","versionInfo":"33.4.0-jre","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/com.google.guava/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-checkstyle-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-checkstyle-plugin-2.17-75c946","versionInfo":"2.17","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-jxr-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-jxr-plugin-2.5-75c946","versionInfo":"2.5","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-checkstyle-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-checkstyle-plugin-3.1.1-75c946","versionInfo":"3.1.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.glassfish.jaxb:jaxb-runtime","SPDXID":"SPDXRef-maven-org.glassfish.jaxb-jaxb-runtime-4.0.3-75c946","versionInfo":"4.0.3","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"BSD-3-Clause","copyrightText":"Copyright (c) 1997, 2021 Oracle and/or its affiliates, Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved., Copyright (c) 1997, 2022 Oracle and/or its affiliates, Copyright (c) 1997, 2022 Oracle and/or its affiliates. All rights reserved., Copyright (c) 1997, 2023 Oracle and/or its affiliates, Copyright (c) 1997, 2023 Oracle and/or its affiliates. All rights reserved., Copyright (c) 2013, 2023 Oracle and/or its affiliates, Copyright (c) 2013, 2023 Oracle and/or its affiliates. All rights reserved., Copyright (c) 2014, 2021 Oracle and/or its affiliates, Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved., Copyright (c) 2018 Oracle and/or its affiliates","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.glassfish.jaxb/[email protected]"}]},{"name":"org.slf4j:slf4j-api","SPDXID":"SPDXRef-maven-org.slf4j-slf4j-api-2.0.12-75c946","versionInfo":"2.0.12","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"MIT","copyrightText":"Copyright (c) 2004-2022 QOS.ch Sarl (Switzerland)","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.slf4j/[email protected]"}]},{"name":"org.apache.logging.log4j:log4j-slf4j2-impl","SPDXID":"SPDXRef-maven-org.apache.logging.log4j-log4j-slf4j2-impl-2.23.1-75c946","versionInfo":"2.23.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 1999-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.logging.log4j/[email protected]"}]},{"name":"org.sonatype.central:central-publishing-maven-plugin","SPDXID":"SPDXRef-maven-org.sonatype.central-central-publishing-maven-plugin-0.8.0-75c946","versionInfo":"0.8.0","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.sonatype.central/[email protected]"}]},{"name":"org.junit.vintage:junit-vintage-engine","SPDXID":"SPDXRef-maven-org.junit.vintage-junit-vintage-engine-5.10.1-75c946","versionInfo":"5.10.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"EPL-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.junit.vintage/[email protected]"}]},{"name":"org.junit.jupiter:junit-jupiter-engine","SPDXID":"SPDXRef-maven-org.junit.jupiter-junit-jupiter-engine-5.10.1-75c946","versionInfo":"5.10.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"EPL-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.junit.jupiter/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-jar-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-jar-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-jar-plugin"}]},{"name":"org.apache.maven.plugins:maven-source-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-source-plugin-3.3.1-75c946","versionInfo":"3.3.1","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 2002-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-deploy-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-deploy-plugin-3.1.3-75c946","versionInfo":"3.1.3","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","copyrightText":"Copyright 2004-2024 The Apache Software Foundation","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-javadoc-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-javadoc-plugin-3.11.2-75c946","versionInfo":"3.11.2","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/[email protected]"}]},{"name":"org.junit.jupiter:junit-jupiter-engine","SPDXID":"SPDXRef-maven-org.junit.jupiter-junit-jupiter-engine-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.junit.jupiter/junit-jupiter-engine"}]},{"name":"org.junit.jupiter:junit-jupiter-params","SPDXID":"SPDXRef-maven-org.junit.jupiter-junit-jupiter-params-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.junit.jupiter/junit-jupiter-params"}]},{"name":"org.junit.vintage:junit-vintage-engine","SPDXID":"SPDXRef-maven-org.junit.vintage-junit-vintage-engine-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.junit.vintage/junit-vintage-engine"}]},{"name":"org.apache.maven.plugins:maven-compiler-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-compiler-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-compiler-plugin"}]},{"name":"com.google.guava:guava","SPDXID":"SPDXRef-maven-com.google.guava-guava-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/com.google.guava/guava"}]},{"name":"junit-addons:junit-addons","SPDXID":"SPDXRef-maven-junit-addons-junit-addons-1.4-75c946","versionInfo":"1.4","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-1.1","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/junit-addons/[email protected]"}]},{"name":"org.biojava:biojava-alignment","SPDXID":"SPDXRef-maven-org.biojava-biojava-alignment-7.2.5-SNAPSHOT-75c946","versionInfo":"7.2.5-SNAPSHOT","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.biojava/[email protected]"}]},{"name":"org.codehaus.mojo:buildnumber-maven-plugin","SPDXID":"SPDXRef-maven-org.codehaus.mojo-buildnumber-maven-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.codehaus.mojo/buildnumber-maven-plugin"}]},{"name":"net.sourceforge.jmol:jmol","SPDXID":"SPDXRef-maven-net.sourceforge.jmol-jmol-13.0.14-75c946","versionInfo":"13.0.14","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/net.sourceforge.jmol/[email protected]"}]},{"name":"org.biojava:biojava-structure-gui","SPDXID":"SPDXRef-maven-org.biojava-biojava-structure-gui-7.2.5-SNAPSHOT-75c946","versionInfo":"7.2.5-SNAPSHOT","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.biojava/[email protected]"}]},{"name":"org.apache.maven.plugins:maven-shade-plugin","SPDXID":"SPDXRef-maven-org.apache.maven.plugins-maven-shade-plugin-75c946","downloadLocation":"NOASSERTION","filesAnalyzed":false,"externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.maven.plugins/maven-shade-plugin"}]},{"name":"org.apache.commons:commons-math","SPDXID":"SPDXRef-maven-org.apache.commons-commons-math-2.2-75c946","versionInfo":"2.2","downloadLocation":"NOASSERTION","filesAnalyzed":false,"licenseConcluded":"Apache-2.0 AND BSD-3-Clause AND Minpack","copyrightText":"Copyright (c) 1992-2008 The University of Tennessee, Copyright (c) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura, Copyright (c) 2003-2009 SciPy Developers, Copyright (c) 2004, Ernst Hairer, Copyright 2001-2011 The Apache Software Foundation, Copyright 2009 Google Inc.","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:maven/org.apache.commons/[email protected]"}]},{"name":"com.github.biojava/biojava","SPDXID":"SPDXRef-github-biojava-biojava-master-fa3667","versionInfo":"master","downloadLocation":"git+https://github.com/biojava/biojava","filesAnalyzed":false,"licenseDeclared":"LGPL-2.1","externalRefs":[{"referenceCategory":"PACKAGE-MANAGER","referenceType":"purl","referenceLocator":"pkg:github/biojava/biojava@master"}]}],"relationships":[{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.biojava-jcolorbrewer-5.2-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-net.sf.json-lib-json-lib-2.4-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-javadoc-plugin-3.11.2-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.junit.jupiter-junit-jupiter-engine-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-surefire-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-checkstyle-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.junit.jupiter-junit-jupiter-params-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-xmlunit-xmlunit-1.6-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.junit.vintage-junit-vintage-engine-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-net.sourceforge.jmol-jmol-13.0.14-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.commons-commons-math-2.2-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.logging.log4j-log4j-api-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.glassfish.jaxb-jaxb-runtime-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.logging.log4j-log4j-core-2.23.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-checkstyle-plugin-2.17-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-source-plugin-3.3.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.slf4j-slf4j-api-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-resources-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.rcsb-mmtf-api-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.jvnet.jaxb2.maven2-maven-jaxb2-plugin-0.14.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.junit.jupiter-junit-jupiter-params-5.10.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-jakarta.xml.bind-jakarta.xml.bind-api-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-assembly-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.rcsb-mmtf-serialization-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-enforcer-plugin-3.5.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.biojava.thirdparty-forester-1.039-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.junit.jupiter-junit-jupiter-engine-5.10.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.biojava-biojava-structure-gui-7.2.5-SNAPSHOT-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.biojava-biojava-core-7.2.5-SNAPSHOT-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.biojava.thirdparty-forester-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-release-plugin-3.1.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-gpg-plugin-1.6-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.glassfish.jaxb-jaxb-runtime-4.0.3-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.slf4j-slf4j-api-2.0.12-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.sonatype.central-central-publishing-maven-plugin-0.8.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-compiler-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-site-plugin-3.21.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.logging.log4j-log4j-slf4j2-impl-2.23.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-jar-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-com.fasterxml.jackson.core-jackson-databind-2.13.4.2-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.biojava-biojava-alignment-7.2.5-SNAPSHOT-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-shade-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.biojava-biojava-structure-7.2.5-SNAPSHOT-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-deploy-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-githubactions-actions-checkout-4..-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-githubactions-actions-setup-java-4..-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-project-info-reports-plugin-3.8.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-install-plugin-3.1.3-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-junit-junit-4.13.2-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.logging.log4j-log4j-slf4j2-impl-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.jgrapht-jgrapht-core-1.4.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.codehaus.mojo-buildnumber-maven-plugin-1.4-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-java3d-vecmath-1.3.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-jakarta.xml.bind-jakarta.xml.bind-api-4.0.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-jarsigner-plugin-1.4-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.logging.log4j-log4j-api-2.23.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-jxr-plugin-2.5-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-shade-plugin-3.2.4-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-net.sf-stat-scm-1.2.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-junit-junit-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-net.sourceforge.jmol-jmol-14.31.10-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-surefire-plugin-3.5.2-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.logging.log4j-log4j-core-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-com.google.guava-guava-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-junit-addons-junit-addons-1.4-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-resources-plugin-3.2.0-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-project-info-reports-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-com.google.guava-guava-33.4.0-jre-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-checkstyle-plugin-3.1.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.junit.vintage-junit-vintage-engine-5.10.1-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.apache.maven.plugins-maven-deploy-plugin-3.1.3-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.codehaus.mojo-buildnumber-maven-plugin-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-github-biojava-biojava-master-fa3667","relatedSpdxElement":"SPDXRef-maven-org.rcsb-mmtf-codec-75c946","relationshipType":"DEPENDS_ON"},{"spdxElementId":"SPDXRef-DOCUMENT","relatedSpdxElement":"SPDXRef-github-biojava-biojava-master-fa3667","relationshipType":"DESCRIBES"}]}