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Achievement: QuickdrawAchievement: Pull Sharkx2Achievement: YOLO

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@HMS-IAC

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rkarmaka/README.md

👋 Hi, I'm Ranit Karmakar

AI Scientist | Bioimage Analysis | Generative AI | Applied Researcher
📍 Boston, MA | Harvard Medical School

🙋🏽‍♂️ About Me

  • 🎓 PhD in Computer Engineering with focus on AI in healthcare (applied + entrepreneurial)
  • 🧠 Researching Computer Vision, Bioimage Analysis, Image Quality Assessment, Evaluation, and Language Models
  • 🧑‍🏫 Produced and taught workshops on image analysis, Python, image segmentation, and ML & AI
  • 💡 Passionate about open-source, applied ML, and bridging research → real-world impact

🛠️ Skills & Tools

Languages & Frameworks:
Python | SQL | PyTorch | TensorFlow | Scikit-learn | OpenCV | LangChain | Ollama | HuggingFace

Specialized:
Computer Vision | Bioimage Analysis | Machine Learning

Software Development:
Flask | FastAPI | Streamlit | Gradio | Git | Docker | VS Code | Jupyter | Conda

📌 Featured Projects

  • 🔬 BioIQ: Quality control toolkit for bioimage analysis
  • 🏥 Mobile-PolypNet: Lightweight segmentation for colonoscopy polyp detection
  • 🎨 LUTipy: Python package for aesthetic microscopy LUTs

🌍 Connect with Me

⭐️ Always excited to collaborate!

Pinned Loading

  1. NoRI NoRI Public

    Forked from HMS-IAC/NoRI

    Pipeline for kidney tissue segmentation & quantification using Normalized Raman Imaging (NoRI) with SAM & Ilastik.

    Python 1

  2. SoftPQ SoftPQ Public

    SoftPQ is a tunable, robust instance segmentation metric that replaces binary matching with soft matching to enable more robust and interpretable evaluation aligned with qualitative segmentation qu…

    JavaScript 2 1

  3. BioIQ BioIQ Public

    Quality control for bioimage analysis

    Jupyter Notebook 1

  4. LUTiPy LUTiPy Public

    LUTiPy is a Python package for creating aesthetically pleasing composite images from fluorescent microscopy data using complementary LUTs.

    Jupyter Notebook 1

  5. Mobile-PolypNet Mobile-PolypNet Public

    Code and models for Mobile-PolypNet

    Python 4 1

  6. SAM-using-Python-for-Microscopy-Data SAM-using-Python-for-Microscopy-Data Public

    Jupyter Notebook 4 3