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Orcapod Python

Orcapod's Python library for developing reproducbile scientific pipelines.

Continuous Integration

This project uses GitHub Actions for continuous integration:

  • Run Tests: A workflow that runs tests on Ubuntu with multiple Python versions.

Running Tests Locally

To run tests locally:

# Install the package with test dependencies
pip install -e ".[test]"

# Run tests with coverage
pytest -v --cov=src --cov-report=term-missing

Development Setup

For development, you can install all optional dependencies:

# Install all development dependencies 
pip install -e ".[test,dev]"
# or
pip install -r requirements-dev.txt