The Wayback Machine - https://web.archive.org/web/20230205051126/https://github.com/topics/computational-biology

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computational-biology

Here are 767 public repositories matching this topic...

Developer-Y / cs-video-courses

List of Computer Science courses with video lectures.

programming-language computer-science security machine-learning bioinformatics web-development reinforcement-learning computer-vision deep-learning algorithms robotics computational-biology databases embedded-systems systems computational-physics quantum-computing computer-architecture database-systems

Updated Feb 4, 2023

graphein

a-r-j / graphein

Sponsor

Protein Graph Library

Updated Jan 31, 2023
Jupyter Notebook

seq-lang / seq

A high-performance, Pythonic language for bioinformatics

python programming-language bioinformatics compiler genomics computational-biology domain-specific-language

Updated Dec 8, 2022
C++

3dmol / 3Dmol.js

WebGL accelerated JavaScript molecular graphics library

computational-biology molecular-graphics computational-chemistry molecular-modeling

Updated Feb 1, 2023
Jupyter Notebook

opensim-org / opensim-core

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

science engineering simulation biological-simulations computational-biology biomechanics computational-science musculoskeletal-models

Updated Feb 2, 2023
C++

BioPandas / biopandas

Working with molecular structures in pandas DataFrames

bioinformatics pdb molecular-structures pandas-dataframe protein-structure molecule computational-biology drug-discovery molecules mol2 pdb-files

Updated Jan 29, 2023
Python

Mariewelt / OpenChem

OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

machine-learning deep-neural-networks deep-learning computational-biology pytorch computational-chemistry drug-discovery drug-design predictive-modeling graph-convolutional-networks qsar

Updated Apr 27, 2022
Python

dash-cytoscape

plotly / dash-cytoscape

Sponsor

Interactive network visualization in Python and Dash, powered by Cytoscape.js

data-science bioinformatics plotly network-graph computational-biology dash biopython graph-theory cytoscape network-visualization cytoscapejs plotly-dash

Updated Dec 6, 2022
Python

eselkin / awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

awesome computational-biology neuroscience computational-neuroscience awesome-list computational computational-linguistics computational-psychiatry computational-psychology mathematical-neuroscience

Updated Jul 15, 2022

poly

TimothyStiles / poly

Sponsor

A Go package for engineering organisms.

bioinformatics synthetic-biology computational-biology dna genbank fasta molecular-biology synbio bioengineering primer-design golden-gate dna-barcode plasmids dna-barcoding codon-optimizer genetic-engineering engineering-organisms sequence-hashing

Updated Feb 3, 2023
Go

gcorso / DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

machine-learning binding computational-biology docking non-euclidean-geometry equivariance diffusion-models score-based-models

Updated Feb 2, 2023
Python

asoplata / open-computational-neuroscience-resources

A publicly-editable collection of open computational neuroscience resources

awesome computational-biology neuroscience computational-neuroscience open-science awesome-list brain neuroimaging-data neuroscience-methods neuroscience-data neural-simulators electrophysiological-data neuron-models neural-simulations simulation-neuroscience

Updated Jan 13, 2023

opencobra / cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

python flux bioinformatics modeling systems-biology computational-biology biochemistry metabolism cobra metabolic-models sbml metabolic-network cell-design strain-engineering sbml-model sbml-simulation

Updated Jan 3, 2023
Jupyter Notebook

biotite

biotite-dev / biotite

A comprehensive library for computational molecular biology

bioinformatics structural-biology computational-biology pdb-files sequence-analysis

Updated Feb 4, 2023
Python

Benjamin-Lee / deep-rules

Ten Quick Tips for Deep Learning in Biology

data-science machine-learning bioinformatics deep-learning genomics biology computational-biology manuscript manubot

Updated Nov 30, 2021
HTML

bioSyntax / bioSyntax

Syntax highlighting for computational biology

syntax-highlighting vim less bioinformatics pdb sublime-text computational-biology gedit vcf fasta bam

Updated Dec 30, 2022
Shell

aquaskyline / SOAPdenovo2

Next generation sequencing reads de novo assembler.

bioinformatics genome assembly computational-biology soapdenovo

Updated Apr 19, 2021
C

AngelRuizMoreno / Jupyter_Dock

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

cheminformatics protein-structure jupyter-notebook computational-biology protein drug-discovery drug-repurposing rdkit openbabel drug-design mdanalysis autodock ledock molecular-docking autodock-vina py3dmol

Updated May 23, 2022
Jupyter Notebook

ucscGenomeBrowser / kent

UCSC Genome Browser source tree. Stable branch: "beta".

bioinformatics computational-biology data-visualisation genomics-visualization

Updated Feb 4, 2023
C

msmbuilder / vde

Variational Autoencoder for Dimensionality Reduction of Time-Series

python deep-learning time-series molecular-dynamics computational-biology pytorch computational-chemistry variational-autoencoder

Updated May 1, 2022
Jupyter Notebook

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