Microbial community genomics in the ocean
- PMID: 15886695
- DOI: 10.1038/nrmicro1158
Microbial community genomics in the ocean
Abstract
Marine microbial communities were among the first microbial communities to be studied using cultivation-independent genomic approaches. Ocean-going genomic studies are now providing a more comprehensive description of the organisms and processes that shape microbial community structure, function and dynamics in the sea. Through the lens of microbial community genomics, a more comprehensive view of uncultivated microbial species, gene and biochemical pathway distributions, and naturally occurring genomic variability is being brought into sharper focus. Besides providing new perspectives on oceanic microbial communities, these new studies are now poised to reveal the fundamental principles that drive microbial ecological and evolutionary processes.
Similar articles
-
Community genomics among stratified microbial assemblages in the ocean's interior.Science. 2006 Jan 27;311(5760):496-503. doi: 10.1126/science.1120250. Science. 2006. PMID: 16439655
-
Genomic perspectives in microbial oceanography.Nature. 2005 Sep 15;437(7057):336-42. doi: 10.1038/nature04157. Nature. 2005. PMID: 16163343 Review.
-
Microbial ecology of ocean biogeochemistry: a community perspective.Science. 2008 May 23;320(5879):1043-5. doi: 10.1126/science.1153527. Science. 2008. PMID: 18497289 Review.
-
Cultivating the uncultivated: a community genomics perspective.Trends Microbiol. 2005 Sep;13(9):411-5. doi: 10.1016/j.tim.2005.07.003. Trends Microbiol. 2005. PMID: 16043355 Review.
-
Metagenomics. Ocean study yields a tidal wave of microbial DNA.Science. 2007 Mar 16;315(5818):1486-7. doi: 10.1126/science.315.5818.1486. Science. 2007. PMID: 17363641 No abstract available.
Cited by
-
Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms.Nucleic Acids Res. 2013 Jan 7;41(1):e3. doi: 10.1093/nar/gks828. Epub 2012 Aug 31. Nucleic Acids Res. 2013. PMID: 22941634 Free PMC article.
-
Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes.PLoS Biol. 2007 Mar;5(3):e82. doi: 10.1371/journal.pbio.0050082. PLoS Biol. 2007. PMID: 17355177 Free PMC article.
-
Signal processing for metagenomics: extracting information from the soup.Curr Genomics. 2009 Nov;10(7):493-510. doi: 10.2174/138920209789208255. Curr Genomics. 2009. PMID: 20436876 Free PMC article.
-
Cell surface structures of archaea.J Bacteriol. 2008 Sep;190(18):6039-47. doi: 10.1128/JB.00546-08. Epub 2008 Jul 11. J Bacteriol. 2008. PMID: 18621894 Free PMC article. Review. No abstract available.
-
Diversity and abundance of nitrate assimilation genes in the northern South china sea.Microb Ecol. 2008 Nov;56(4):751-64. doi: 10.1007/s00248-008-9394-7. Epub 2008 May 15. Microb Ecol. 2008. PMID: 18481138
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources