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The Wayback Machine - https://web.archive.org/web/20200718112607/https://github.com/topics/sequencing
Here are
250 public repositories
matching this topic...
Sampler, Sequencer, Multi-engine synth and effects - in a box!
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Updated
Mar 26, 2020
Python
Official code repository for GATK versions 4 and up
Updated
Jul 17, 2020
Java
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Data intensive science for everyone.
Updated
Jul 18, 2020
Python
Analysis of single cell RNA-seq data course
Simple & Efficient data access for Scala and Scala.js
Updated
Jul 13, 2020
Scala
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
A Java API for high-throughput sequencing data (HTS) formats.
Updated
Jul 15, 2020
Java
Intuitive local web frontend for the BLAST bioinformatics tool
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Updated
May 14, 2020
Python
Rapid large-scale prokaryote pan genome analysis
Analysis Pipeline for Single Cell ATAC-seq
De novo assembly from Oxford Nanopore reads.
A repository for setting up a RNAseq workflow
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Updated
Jun 24, 2020
Python
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
A tool to circularize genome assemblies
Updated
Jun 9, 2020
Python
Finds SNP sites from a multi-FASTA alignment file
UGENE is free open-source cross-platform bioinformatics software
Antimicrobial Resistance Identification By Assembly
Updated
Jun 7, 2020
Python
Accurate and flexible loops calling tool for 3D genomic data.
Updated
May 1, 2020
Jupyter Notebook
A collection of scripts and notes related to genomics and bioinformatics
Polyrhythmic Sequencer library for Web Audio API.
Updated
May 11, 2020
JavaScript
BAM Statistics, Feature Counting and Annotation
An interactive web tool for quality control of DNA sequencing data
a set of abstractions written for pure data, including sequencers, guis, and other utilities.
Generate consensus reads to reduce sequencing noises and remove duplications
Structural variant toolkit for VCFs
Updated
Jul 13, 2020
Python
Protein Identification with Deep Learning
Updated
May 29, 2019
Python
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