BioContainers

Repositories

• multi-package-containers

  Testing building mulled containers for multi-requirement tools.

  docker containers
  37 18 4 93 Updated Sep 23, 2020

• containers

  Bioinformatics containers

  dockerfiles bioinformatics docker-image rkt bioinformatics-containers biocontainers-architecture bioinformatics-analysis
  Dockerfile Apache-2.0 154 413 52 4 Updated Sep 23, 2020

• registry

  Docker for Bioinformatics

  vuejs vue biodocker biocontainers-web
  Vue Apache-2.0 15 18 9 3 Updated Sep 13, 2020

• biocontainers-backend

  Python backend for Biocontainers (Flask + MongoDB)

  rest-api restful-api ga4gh ga4gh-server biocontainers
  Python Apache-2.0 1 2 5 (1 issue needs help) 0 Updated Sep 9, 2020

• edu

  BioContainers Documentation.

  documentation containers travis readthedocs bioconda biocontainers documentation-code
  JavaScript 20 6 0 0 Updated Jul 29, 2020

• bioconda2biocontainer

  BioContainers API client
  Python 0 2 0 0 Updated Jul 29, 2020

• tools-metadata

  Repository to storage clean metadata of the containers in biocontainers registry
  Python Apache-2.0 5 3 0 0 Updated Jul 18, 2020

• backup-scripts

  scritps for different backups in biocontainers
  Python Apache-2.0 0 0 1 0 Updated Jun 2, 2020

• singularity-build-bot

  Nightly build of Singularity containers
  Python 0 1 0 0 Updated May 13, 2020

• ci

  Continuous integrations scripts for biocontainers
  Python 0 0 0 0 Updated May 7, 2020

• bioconda-recipes

  Forked from bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.
  Shell 1,586 0 0 0 Updated Apr 21, 2020

• specs

  BioContainers specifications

  docker bioinformatics specifications rkt biocontainers-specification biocontainers bioinformatics-containers
  Apache-2.0 13 42 11 (1 issue needs help) 0 Updated Mar 9, 2020

• workflows

  Bioinformatics curated workflows that use Biocontainers tools

  bioinformatics bioinformatics-pipeline workflows
  Apache-2.0 4 18 0 0 Updated Jun 11, 2019

• registry-web-dev Archived

  BioContainers Registry UI, hosted in http://biocontainers.pro
  Vue Apache-2.0 1 0 0 0 Updated Mar 6, 2019

• tool-registry-service-schemas

  Forked from ga4gh/tool-registry-service-schemas

  APIs for discovering genomics tools, their metadata and their containers
  Shell Apache-2.0 13 0 0 0 Updated Nov 26, 2018

• registry-backend-deprecated Archived
  Java Apache-2.0 1 0 6 0 Updated Oct 9, 2018

• service-containers

  Repository containing Services that can be deploy using Containers technologies (Docker Compose, Heml)
  0 1 1 0 Updated Sep 20, 2018

• biotools-bioconda-ids

  Mapping scripts between bioconda and biotools IDs
  Jupyter Notebook 4 0 0 1 Updated Mar 23, 2018

• containers-ci-system
  Shell 0 0 0 0 Updated Feb 2, 2018

• kubernetes-init
  Shell 0 0 0 0 Updated Nov 10, 2017

• workshops

  Repository for BioContainers Hackthons and Workshops

  bioinformatics workshop materials containers hackthon
  JavaScript Apache-2.0 3 2 0 1 Updated Oct 10, 2017

• auto-mulled

  Generating Docker containers from bioconda on the fly with Travis cron-job feature.
  MIT 4 2 3 0 Updated Jun 23, 2017

• software-archive

  Binary and source code archive

  internal bioinformatics binaries binary-data
  0 0 1 0 Updated Feb 7, 2017

• mulled

  Mulled - Automatized Containerized Software Repository

  docker bioinformatics rkt mulled involucro
  23 47 2 9 Updated Nov 17, 2016

• local-containers

  This repository contains all the containers that can't be deploy in public registries or need customs settings

  docker-image biocontainers private-cotainers
  Shell 1 1 0 0 Updated Oct 13, 2016

• tools

  Tools used for the management of the repositories
  Shell Apache-2.0 0 0 0 0 Updated Oct 4, 2015