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The Wayback Machine - https://web.archive.org/web/20200810215043/https://github.com/topics/bioinformatics-pipeline
#
bioinformatics-pipeline
Here are
334 public repositories
matching this topic...
Robust, flexible and resource-efficient pipelines using Go and the commandline
A language and runtime for distributed, incremental data processing in the cloud
Rapid large-scale prokaryote pan genome analysis
Analysis Pipeline for Single Cell ATAC-seq
ATAC-seq and DNase-seq processing pipeline
Updated
Sep 25, 2019
Python
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
A tool to circularize genome assemblies
Updated
Jun 9, 2020
Python
NGLess: NGS with less work
Updated
Aug 10, 2020
Haskell
Finds SNP sites from a multi-FASTA alignment file
Package for fetching metadata and downloading data from SRA/ENA
Updated
Aug 8, 2020
Python
Antimicrobial Resistance Identification By Assembly
Updated
Jun 7, 2020
Python
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Updated
Oct 21, 2019
Jupyter Notebook
GCP Essentials for Bioinformatics Researchers
Updated
Jun 29, 2020
Jupyter Notebook
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
Updated
Jul 30, 2020
Python
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Updated
Aug 1, 2020
Python
A modular annotation tool for genomic variants
Updated
Aug 7, 2020
JavaScript
Infectious Disease Sequencing Platform
Updated
Aug 10, 2020
Ruby
A bioinformatics pipeline to analyze mtDNA from NGS data
Updated
Jan 17, 2020
Python
Cluster single cells and analyze cell clade relationships with colorful visualizations.
Updated
Aug 7, 2020
Haskell
A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)
Updated
Aug 10, 2020
Java
See the main fork of this repository here >>>
Updated
Jun 17, 2020
Nextflow
Improve the quality of a denovo assembly by scaffolding and gap filling
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Updated
Aug 10, 2020
Python
de novo virus assembler of Illumina paired reads
Updated
Jun 9, 2020
Python
A collection of reusable WDL tasks. Category:Other
My daily notebook on bioinformatic data analysis and machine learning
Updated
Jul 6, 2017
Python
Bystro genetic analysis (annotation, filtering, statistics)
Updated
Jul 22, 2020
Perl
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and RNA-seq workflows.
Updated
Aug 10, 2020
Python
High-throughput gene to knowledge mapping through massive integration of public sequencing data.
Updated
Feb 26, 2019
Jupyter Notebook
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