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The Wayback Machine - https://web.archive.org/web/20200810214836/https://github.com/topics/nextflow
Here are
260 public repositories
matching this topic...
A DSL for data-driven computational pipelines
Updated
Aug 5, 2020
Groovy
A curated list of nextflow based pipelines
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
Updated
Jul 31, 2020
Nextflow
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳 📦
Updated
May 11, 2020
Python
Updated
May 14, 2020
Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Updated
Jan 27, 2020
Nextflow
Our VM/Docker sharing infrastructure and management component
Updated
Aug 10, 2020
Java
Python package with helper tools for the nf-core community.
Updated
Aug 7, 2020
Python
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
Updated
Aug 7, 2020
Nextflow
ChIP-seq peak-calling, QC and differential analysis pipeline.
Updated
Aug 5, 2020
Nextflow
A graphical user interface for distributed data processing of high throughput genomics
Updated
Jul 22, 2020
JavaScript
Updated
Aug 10, 2020
Groovy
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Updated
Aug 20, 2018
Groovy
A flexible pipeline for complete analysis of bacterial genomes
Updated
Aug 10, 2020
HTML
GATK RNA-Seq Variant Calling in Nextflow
Updated
Aug 10, 2020
Nextflow
Example Nextflow pipelines and programming techniques
Updated
May 18, 2020
Nextflow
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Updated
Aug 3, 2020
Nextflow
16S rRNA amplicon sequencing analysis workflow using QIIME2
Updated
Jul 31, 2020
Nextflow
Multi-sample somatic variant caller
ATAC-seq peak-calling, QC and differential analysis pipeline
Updated
Jul 31, 2020
Nextflow
Nextflow pipeline for analysis of direct RNA Nanopore reads
Google's DeepVariant variant caller as a Nextflow pipeline
Updated
Jul 31, 2020
Nextflow
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
Updated
Nov 7, 2019
Nextflow
An automated RNA-seq pipeline using Nextflow
Updated
Aug 4, 2020
Shell
A proof of concept RNA-Seq pipeline with Nextflow
Updated
Feb 29, 2020
Nextflow
Assembly and binning of metagenomes
Updated
Aug 10, 2020
Nextflow
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
Updated
Jun 3, 2018
Nextflow
GATK4 Best Practice Nextflow Pipeline
A proof of concept of RNAseq pipeline
Updated
Aug 8, 2020
Nextflow
🔬 De novo assembly of nanopore reads using nextflow
Updated
Aug 5, 2020
Nextflow
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