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The Wayback Machine - https://web.archive.org/web/20200730185547/https://github.com/topics/sequence-alignment
Here are
150 public repositories
matching this topic...
Official git repository for Biopython (originally converted from CVS)
Updated
Jul 30, 2020
Python
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Versatile open-source tool for microbiome analysis
📖 🔬 ☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Updated
Jul 24, 2020
Java
Bidirectionally transformed strings
Updated
Jul 18, 2020
Python
The next version of bwa-mem
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Intuitive local web frontend for the BLAST bioinformatics tool
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Proof-of-concept seq-to-graph mapper and graph generator
Global alignment and alignment extension
BISulfite-seq CUI Toolkit
Genome wide orthology inference and dNdS estimation
Collection of commonly used RDP Tools for easy building
Updated
Apr 9, 2020
Makefile
Arioc: GPU-accelerated DNA short-read alignment
A fast multiple sequence alignment program.
Updated
Jul 25, 2020
Julia
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Updated
Jul 23, 2020
HTML
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Updated
Jul 27, 2020
Python
Fast & accurate alignment of barcoded short-reads
SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
DOM Text Based Multiple Sequence Alignment Library
Updated
Jul 9, 2019
JavaScript
A collection of publications on comparison of high-throughput sequencing technologies.
Rust implementation of sequence alignment / Levenshtein distance by A* acceleration of the DP algorithm
Collection of sequence alignment algorithms.
Updated
Jul 16, 2020
JavaScript
Fast pairwise sequence alignment using SeqAn, in Python.
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