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Mar 8, 2022 - Python
#
reproducible-science
Here are 191 public repositories matching this topic...
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
python
infrastructure
machine-learning
mongodb
reproducible-research
reproducible-science
reproducibility
A DSL for data-driven computational pipelines
docker
groovy
hello
aws
cloud
bioinformatics
pipeline
nextflow
hpc
reproducible-research
workflow-engine
slurm
pipeline-framework
sge
singularity
reproducible-science
dataflow
singularity-containers
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Mar 8, 2022 - Groovy
rrtools: Tools for Writing Reproducible Research in R
r
reproducible-research
reproducible-science
research-tool
research-project
reproducibility
research-paper
reproducible-paper
research-compendium
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Dec 12, 2021 - R
Workflow Description Language - Specification and Implementations
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Mar 1, 2022 - Java
Package an R workspace and all dependencies as a Docker container
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Feb 17, 2022 - R
remram44
commented
Jan 14, 2021
Easiest would probably be to use cffi instead of manual CPython binding.
See also conda-forge/reprozip-feedstock#11
Future Gadget Laboratory
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Mar 3, 2018 - HTML
Fully reproducible, open source scientific articles in LaTeX.
open-source
latex
continuous-integration
reproducible-research
reproducible-science
scientific-workflows
scientific-papers
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Feb 21, 2022 - TeX
A curated list of reproducible research case studies, projects, tutorials, and media
awesome
reproducible-research
reproducible-science
awesome-list
reproducibility
reproducible-workflows
reproducible-analysis
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Feb 8, 2022 - Python
docker
reproducible-research
rmarkdown
reproducible-science
knitr
dynamic-documents
containerization
statistical-computing
liftr
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Dec 19, 2021 - R
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
docker
workflow
bioinformatics
pipeline
genomics
nextflow
cancer
somatic-variants
reproducible-research
containers
next-generation-sequencing
singularity
badge
reproducible-science
travis-link
somatic
germline
scilifelab
gitter-badge
germline-variants
gitter-link
scilifelab-link
nextflow-link
nbis-link
ngi-link
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Jan 27, 2020 - Nextflow
Everware is about re-useable science, it allows people to jump right in to your research code.
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Jun 23, 2018 - Python
thewtex
commented
Nov 5, 2019
Add a PolyDataIO based on the VTK::IOPDAL
module:
https://github.com/Kitware/VTK/tree/master/IO/PDAL
Steps (a complete example can be found here):
- Verify that the test suite runs and passes
remram44
commented
Mar 20, 2017
Using drag and drop can be annoying if nodes are far apart and zoomed out.
dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
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Nov 10, 2021 - CMake
Data Analysis Workflows & Reproducibility Learning Resources
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Mar 4, 2021
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
python
c-plus-plus
workflow
structural-biology
image-processing
reproducible-science
usability
electron-microscopy
cryo-em
single-particle-analisys
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Jun 4, 2020 - Python
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
benchmark
reproducible-research
reproducible-science
benchmark-suite
changepoint
change-detection
change-point
reproducible-paper
change-point-detection
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Feb 26, 2022
Future Gadget Machine
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Mar 22, 2018 - JavaScript
Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
dockerfiles
reproducible-research
open-science
reproducible-science
containerization
reproducible-paper
containerisation
ten-simple-rules
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Nov 11, 2020 - TeX
List of Reproducible Audio Research Papers
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Mar 1, 2018
SEER, reimplemented in python 🐍 🔮
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Jul 19, 2021 - Python
Configurable, reproducible, and scalable workflows in Python, via Hydra
machine-learning
scalable
deep-learning
configuration
pytorch
reproducible-science
machinelearning
configurable
reproducibility
yaml-configuration
dynamic-configuration
dataclasses
pytorch-lightning
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Mar 7, 2022 - Python
Electromagnetic methods in geophysics - open educational resources.
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Jan 28, 2022 - HTML
docker
science
benchmarking
ai
reproducible-research
artificial-intelligence
reproducible-science
benchmark-framework
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Sep 10, 2020 - JavaScript
unit-testing for a collection of jupyter notebooks using nbconvert
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Aug 12, 2020 - Python
Source code for the CERN Analysis Preservation portal
python
flask
big-data
json-schema
reproducible-research
reproducible-science
research-data-management
research-data-repository
research-data-life-cycle-management
invenio
digital-library
hacktoberfest
inveniosoftware
reusable-artifacts
research-data
digital-repository
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Mar 8, 2022 - JavaScript
Reproducible Science: what, why, how
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Mar 5, 2019 - RMarkdown
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
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Jul 12, 2021 - Python
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Version of Singularity:
3.0.3
Expected behavior
Some progress or update information during the creation of the SIF file.
Actual behavior
During "Creating SIF file..." step, the console does not produce any visible output for the user - but does create the resulting file eventually.
Steps to reproduce behavior
I was executing a few “larger” builds through the bui