Ncbi-mime-asn1 ::= strucseq {
structure {
id {
mmdb-id 11440
},
descr {
name "1IGR",
pdb-comment "remark 3: Refinement.",
pdb-comment "remark 3: Program : Refmac",
pdb-comment "remark 3: Authors : Murshudov,Vagin,Dodson",
pdb-comment "remark 3: Data Used In Refinement.",
pdb-comment "remark 3: Resolution Range High (Angstroms) : 2.60",
pdb-comment "remark 3: Resolution Range Low (Angstroms) : 7.0",
pdb-comment "remark 3: Data Cutoff (Sigma(F)) : 2.000",
pdb-comment "remark 3: Completeness For Range (%) : 97.0",
pdb-comment "remark 3: Number Of Reflections : 26963",
pdb-comment "remark 3: Fit To Data Used In Refinement.",
pdb-comment "remark 3: Cross-Validation Method : Throughout",
pdb-comment "remark 3: Free R Value Test Set Selection : Random",
pdb-comment "remark 3: R Value (Working + Test Set) : Null",
pdb-comment "remark 3: R Value (Working Set) : 0.237",
pdb-comment "remark 3: Free R Value : 0.304",
pdb-comment "remark 3: Free R Value Test Set Size (%) : 10.000",
pdb-comment "remark 3: Free R Value Test Set Count : 2693",
pdb-comment "remark 3: Number Of Non-Hydrogen Atoms Used In Refinement.",
pdb-comment "remark 3: Protein Atoms : 3686",
pdb-comment "remark 3: Nucleic Acid Atoms : 0",
pdb-comment "remark 3: Heterogen Atoms : 166",
pdb-comment "remark 3: Solvent Atoms : 48",
pdb-comment "remark 3: B Values.",
pdb-comment "remark 3: From Wilson Plot (A2) : Null",
pdb-comment "remark 3: Mean B Value (Overall, A2) : 52.30",
pdb-comment "remark 3: Overall Anisotropic B Value.",
pdb-comment "remark 3: B11 (A2) : 8.12",
pdb-comment "remark 3: B22 (A2) : -13.10",
pdb-comment "remark 3: B33 (A2) : 0.98",
pdb-comment "remark 3: B12 (A2) : 0.00",
pdb-comment "remark 3: B13 (A2) : 0.00",
pdb-comment "remark 3: B23 (A2) : 0.00",
pdb-comment "remark 3: Estimated Overall Coordinate Error.",
pdb-comment "remark 3: Esu Based On R Value
(A): Null",
pdb-comment "remark 3: Esu Based On Free R Value
(A): Null",
pdb-comment "remark 3: Esu Based On Maximum Likelihood
(A): Null",
pdb-comment "remark 3: Esu For B Values Based On Maximum Likelihood
(A2): Null",
pdb-comment "remark 3: Rms Deviations From Ideal Values.",
pdb-comment "remark 3: Distance Restraints. Rms
Sigma",
pdb-comment "remark 3: Bond Length (A) : 0.017 ;
0.020",
pdb-comment "remark 3: Angle Distance (A) : 0.048 ;
0.040",
pdb-comment "remark 3: Intraplanar 1-4 Distance (A) : 0.051 ;
0.050",
pdb-comment "remark 3: H-Bond Or Metal Coordination (A) : Null ;
Null",
pdb-comment "remark 3: Plane Restraint (A) : 0.038 ;
0.040",
pdb-comment "remark 3: Chiral-Center Restraint (A3) : 0.149 ;
0.150",
pdb-comment "remark 3: Non-Bonded Contact Restraints.",
pdb-comment "remark 3: Single Torsion (A) : 0.219 ;
0.300",
pdb-comment "remark 3: Multiple Torsion (A) : 0.296 ;
0.300",
pdb-comment "remark 3: H-Bond (X...Y) (A) : 0.226 ;
0.300",
pdb-comment "remark 3: H-Bond (X-H...Y) (A) : Null ;
Null",
pdb-comment "remark 3: Conformational Torsion Angle Restraints.",
pdb-comment "remark 3: Specified (Degrees) : Null ;
Null",
pdb-comment "remark 3: Planar (Degrees) : 6.000 ;
7.000",
pdb-comment "remark 3: Staggered (Degrees) : 24.100;
15.000",
pdb-comment "remark 3: Transverse (Degrees) : 28.100;
20.000",
pdb-comment "remark 3: Isotropic Thermal Factor Restraints. Rms
Sigma",
pdb-comment "remark 3: Main-Chain Bond (A2) : 3.721 ;
3.000",
pdb-comment "remark 3: Main-Chain Angle (A2) : 5.407 ;
5.000",
pdb-comment "remark 3: Side-Chain Bond (A2) : 7.903 ;
6.000",
pdb-comment "remark 3: Side-Chain Angle (A2) : 9.046 ;
7.000",
pdb-comment "remark 3: Other Refinement Remarks: Planar Restrain For
Peptides,",
pdb-comment "remark 3: Rms0.0384, Sigma0.04, Aromatic Planes Rms
0.0097,",
pdb-comment "remark 3: Sigma0.015",
pdb-comment "remark 4: 1igr Complies With Format V. 2.3, 09-July-1998",
pdb-comment "remark 7: Positions Of Atoms With B Greater Than 75 Are
Not Reliable.",
pdb-comment "remark 7: Atoms Have Been Given Occupancy Of 0.01 Or
Omitted If No",
pdb-comment "remark 7: Electron Density Was Observed.",
pdb-comment "remark 8: For Residues 457-459 The Density Was Notably
Weaker Than",
pdb-comment "remark 8: The Adjacent Residues. This Section Has Been
Included With",
pdb-comment "remark 8: Occupancy Of 0.5",
pdb-comment "remark 9: Little Or No Electron Density Was Observed For
Residues Of",
pdb-comment "remark 9: The Enterokinase Cleavage Site",
pdb-comment "remark 100: This Entry Has Been Processed By Rcsb On
16-Jul-1999.",
pdb-comment "remark 100: The Rcsb Id Code Is Rcsb007214.",
pdb-comment "remark 200: Experimental Details",
pdb-comment "remark 200: Experiment Type : X-Ray
Diffraction",
pdb-comment "remark 200: Date Of Data Collection : 15-Nov-1996",
pdb-comment "remark 200: Temperature (Kelvin) : 103.0",
pdb-comment "remark 200: Ph : 7.50",
pdb-comment "remark 200: Number Of Crystals Used : 1",
pdb-comment "remark 200: Synchrotron (YN) : N",
pdb-comment "remark 200: Radiation Source : Rotating Anode",
pdb-comment "remark 200: Beamline : Null",
pdb-comment "remark 200: X-Ray Generator Model : M18xhf",
pdb-comment "remark 200: Monochromatic Or Laue (ML) : M",
pdb-comment "remark 200: Wavelength Or Range (A) : 1.5418",
pdb-comment "remark 200: Monochromator : Ni Filter",
pdb-comment "remark 200: Optics : Mirrors",
pdb-comment "remark 200: Detector Type : Image Plate",
pdb-comment "remark 200: Detector Manufacturer : Rigaku Raxis Iv",
pdb-comment "remark 200: Intensity-Integration Software : Denzo",
pdb-comment "remark 200: Data Scaling Software : Scalepack",
pdb-comment "remark 200: Number Of Unique Reflections : 118454",
pdb-comment "remark 200: Resolution Range High (A) : 2.600",
pdb-comment "remark 200: Resolution Range Low (A) : 15.000",
pdb-comment "remark 200: Rejection Criteria (Sigma(I)) : 0.000",
pdb-comment "remark 200: Overall.",
pdb-comment "remark 200: Completeness For Range (%) : 99.6",
pdb-comment "remark 200: Data Redundancy : 4.100",
pdb-comment "remark 200: R Merge (I) : 0.06400",
pdb-comment "remark 200: R Sym (I) : Null",
pdb-comment "remark 200: FOR THE DATA SET : 18.7000",
pdb-comment "remark 200: In The Highest Resolution Shell.",
pdb-comment "remark 200: Highest Resolution Shell, Range High (A) : 2.60",
pdb-comment "remark 200: Highest Resolution Shell, Range Low (A) : 2.69",
pdb-comment "remark 200: Completeness For Shell (%) : 97.4",
pdb-comment "remark 200: Data Redundancy In Shell : 3.80",
pdb-comment "remark 200: R Merge For Shell (I) : 0.51900",
pdb-comment "remark 200: R Sym For Shell (I) : Null",
pdb-comment "remark 200: FOR SHELL : 3.300",
pdb-comment "remark 200: Diffraction Protocol: Single Wavelength",
pdb-comment "remark 200: Method Used To Determine The Structure: Miras",
pdb-comment "remark 200: Software Used: Protein, Mlphare, Dm",
pdb-comment "remark 200: Starting Model: Null",
pdb-comment "remark 200: Remark: Null",
pdb-comment "remark 280: Crystal",
pdb-comment "remark 280: Solvent Content, Vs (%): 66.0",
pdb-comment "remark 280: Matthews Coefficient, Vm (Angstroms3DA): 3.40",
pdb-comment "remark 280: Crystallization Conditions: Protein Was
Crystallized From",
pdb-comment "remark 280: 2.0 M Ammonium Sulfate, 100 Mm Hepes, Ph 7.5",
pdb-comment "remark 290: Crystallographic Symmetry",
pdb-comment "remark 290: Symmetry Operators For Space Group: P 21 21 21",
pdb-comment "remark 290: Symop Symmetry",
pdb-comment "remark 290: Nnnmmm Operator",
pdb-comment "remark 290: 1555 X,Y,Z",
pdb-comment "remark 290: 2555 12-X,-Y,12+Z",
pdb-comment "remark 290: 3555 -X,12+Y,12-Z",
pdb-comment "remark 290: 4555 12+X,12-Y,-Z",
pdb-comment "remark 290: Where Nnn -> Operator Number",
pdb-comment "remark 290: Mmm -> Translation Vector",
pdb-comment "remark 290: Crystallographic Symmetry Transformations",
pdb-comment "remark 290: The Following Transformations Operate On The
AtomHETATM",
pdb-comment "remark 290: Records In This Entry To Produce
Crystallographically",
pdb-comment "remark 290: Related Molecules.",
pdb-comment "remark 290: Smtry1 1 1.000000 0.000000 0.000000
0.00000",
pdb-comment "remark 290: Smtry2 1 0.000000 1.000000 0.000000
0.00000",
pdb-comment "remark 290: Smtry3 1 0.000000 0.000000 1.000000
0.00000",
pdb-comment "remark 290: Smtry1 2 -1.000000 0.000000 0.000000
38.69500",
pdb-comment "remark 290: Smtry2 2 0.000000 -1.000000 0.000000
0.00000",
pdb-comment "remark 290: Smtry3 2 0.000000 0.000000 1.000000
60.14500",
pdb-comment "remark 290: Smtry1 3 -1.000000 0.000000 0.000000
0.00000",
pdb-comment "remark 290: Smtry2 3 0.000000 1.000000 0.000000
49.86000",
pdb-comment "remark 290: Smtry3 3 0.000000 0.000000 -1.000000
60.14500",
pdb-comment "remark 290: Smtry1 4 1.000000 0.000000 0.000000
38.69500",
pdb-comment "remark 290: Smtry2 4 0.000000 -1.000000 0.000000
49.86000",
pdb-comment "remark 290: Smtry3 4 0.000000 0.000000 -1.000000
0.00000",
pdb-comment "remark 290: Remark: Null",
pdb-comment "remark 465: Missing Residues",
pdb-comment "remark 465: The Following Residues Were Not Located In The",
pdb-comment "remark 465: Experiment. (Mmodel Number; Resresidue Name;
Cchain",
pdb-comment "remark 465: Identifier; Ssseqsequence Number; Iinsertion
Code.)",
pdb-comment "remark 465: M Res C Ssseqi",
pdb-comment "remark 465: Ser A 460",
pdb-comment "remark 465: Asp A 461",
pdb-comment "remark 465: Val A 462",
pdb-comment "remark 465: Asp A 463",
pdb-comment "remark 465: Asp A 464",
pdb-comment "remark 465: Asp A 465",
pdb-comment "remark 465: Asp A 466",
pdb-comment "remark 470: Missing Atom",
pdb-comment "remark 470: The Following Residues Have Missing
Atoms(Mmodel Number;",
pdb-comment "remark 470: Resresidue Name; Cchain Identifier;
Sseqsequence Number;",
pdb-comment "remark 470: Iinsertion Code):",
pdb-comment "remark 470: M Res Csseqi Atoms",
pdb-comment "remark 470: Glu A 38 Cd Oe1 Oe2",
pdb-comment "remark 470: Arg A 41 Ne Cz Nh1 Nh2",
pdb-comment "remark 470: Tyr A 83 Cg Cd1 Cd2 Ce1 Ce2 Cz
Oh",
pdb-comment "remark 470: Glu A 157 Cg Cd Oe1 Oe2",
pdb-comment "remark 470: Lys A 159 Cd Ce Nz",
pdb-comment "remark 470: Asp A 213 Cg Od1 Od2",
pdb-comment "remark 470: Glu A 295 Cg Cd Oe1 Oe2",
pdb-comment "remark 470: Arg A 336 Cg Cd Ne Cz Nh1 Nh2",
pdb-comment "remark 470: His A 406 Cg Nd1 Cd2 Ce1 Ne2",
pdb-comment "remark 470: Lys A 412 Cd Ce Nz",
pdb-comment "remark 470: Ser A 443 Og",
pdb-comment "remark 470: Glu A 459 Cg Cd Oe1 Oe2",
pdb-comment "remark 470: Lys A 467 Cg Cd Ce Nz",
pdb-comment "remark 470: Glu A 468 Cg Cd Oe1 Oe2",
pdb-comment "remark 500: Geometry And Stereochemistry",
pdb-comment "remark 500: Subtopic: Close Contacts In Same Asymmetric Unit",
pdb-comment "remark 500: The Following Atoms Are In Close Contact.",
pdb-comment "remark 500: Atm1 Res C Sseqi Atm2 Res C Sseqi",
pdb-comment "remark 500: O2 Fuc A 105b N2 Nag A 105c
2.09",
pdb-comment "remark 500: O4 Nag A 105a O5 Nag A 105c
2.17",
pdb-comment "remark 500: Geometry And Stereochemistry",
pdb-comment "remark 500: Subtopic: Covalent Bond Angles",
pdb-comment "remark 500: The Stereochemical Parameters Of The Following
Residues",
pdb-comment "remark 500: Have Values Which Deviate From Expected Values
By More",
pdb-comment "remark 500: Than 4Rmsd (Mmodel Number; Resresidue Name;
Cchain",
pdb-comment "remark 500: Identifier; Sseqsequence Number; Iinsertion
Code).",
pdb-comment "remark 500: Standard Table:",
pdb-comment "remark 500: Format:
(10x,I3,1x,A3,1x,A1,I4,A1,3(1x,A4,2x),12x,F5.1)",
pdb-comment "remark 500: Expected Values: Engh And Huber, 1991",
pdb-comment "remark 500: M Res Csseqi Atm1 Atm2 Atm3",
pdb-comment "remark 500: Ile A 9 C - N - Ca Angl. Dev. 15.3
Degrees",
pdb-comment "remark 500: Glu A 26 Cg - Cd - Oe2 Angl. Dev. 15.6
Degrees",
pdb-comment "remark 500: Arg A 59 Cd - Ne - Cz Angl. Dev. 15.7
Degrees",
pdb-comment "remark 500: Glu A 91 Oe1 - Cd - Oe2 Angl. Dev. 16.3
Degrees",
pdb-comment "remark 500: Asp A 97 Cb - Cg - Od1 Angl. Dev. 14.8
Degrees",
pdb-comment "remark 500: Leu A 131 Ca - Cb - Cg Angl. Dev. 29.9
Degrees",
pdb-comment "remark 500: Ser A 279 Ca - Cb - Og Angl. Dev. -14.6
Degrees",
pdb-comment "remark 500: Geometry And Stereochemistry",
pdb-comment "remark 500: Subtopic: Torsion Angles",
pdb-comment "remark 500: Torsion Angles Outside The Expected
Ramachandran Regions:",
pdb-comment "remark 500: (Mmodel Number; Resresidue Name; Cchain
Identifier;",
pdb-comment "remark 500: Sseqsequence Number; Iinsertion Code).",
pdb-comment "remark 500: Standard Table:",
pdb-comment "remark 500:
Format:(10x,I3,1x,A3,1x,A1,I4,A1,4x,F7.2,3x,F7.2)",
pdb-comment "remark 500: M Res Csseqi Psi Phi",
pdb-comment "remark 500: Asn A 11 68.14 -46.64",
pdb-comment "remark 999: Sequence",
pdb-comment "remark 999: The Polypeptide Consists Of Residues 1-462 Of
Igf-1r, An",
pdb-comment "remark 999: Enterokinase Cleavage Site And An 11 Residue
C-Myc",
pdb-comment "remark 999: Purification Tag.",
pdb-comment "Dbref 1igr A 1 462 Sws P08069 Ig1r_human
31 492",
pdb-comment "Link O6 Nag A 105a C1 Fuc A 105b",
pdb-comment "Link O4 Nag A 105a C1 Nag A 105c",
pdb-comment "Link O6 Nag A 284a C1 Fuc A 284b",
pdb-comment "Link O4 Nag A 284a C1 Nag A 284c",
pdb-comment "Link O4 Nag A 284c C1 Man A 284d",
pdb-comment "Link O3 Man A 284d C1 Man A 284e",
pdb-comment "Link Nd2 Asn A 21 C1 Nag A 21a",
pdb-comment "Link Nd2 Asn A 105 C1 Nag A 105a",
pdb-comment "Link Nd2 Asn A 214 C1 Nag A 214a",
pdb-comment "Link Nd2 Asn A 284 C1 Nag A 284a",
pdb-comment "Cispep 1 Gly A 4 Pro A 5 0 -7.97",
history {
data-source {
name-of-database "Protein Data Bank",
version-of-database release-date std {
year 1999,
month 9,
day 26
},
database-entry-id other-database {
db "PDB",
tag str "1IGR"
},
database-entry-date std {
year 1998,
month 9,
day 28
}
}
},
attribution sub {
authors {
names std {
{
name name {
last "Garrett",
full "T.P.J.Garrett",
initials "T.P.J."
}
},
{
name name {
last "Mckern",
full "N.M.Mckern",
initials "N.M."
}
},
{
name name {
last "Lou",
full "M.Lou",
initials "M."
}
},
{
name name {
last "Frenkel",
full "M.J.Frenkel",
initials "M.J."
}
},
{
name name {
last "Bentley",
full "J.D.Bentley",
initials "J.D."
}
},
{
name name {
last "Lovrecz",
full "G.O.Lovrecz",
initials "G.O."
}
},
{
name name {
last "Elleman",
full "T.C.Elleman",
initials "T.C."
}
},
{
name name {
last "Cosgrove",
full "L.J.Cosgrove",
initials "L.J."
}
},
{
name name {
last "Ward",
full "C.W.Ward",
initials "C.W."
}
}
}
},
imp {
date std {
year 1998,
month 9,
day 28
}
}
},
attribution equiv {
article {
title {
name "Crystal structure of the first three domains of the type-1
insulin-like growth factor receptor."
},
authors {
names std {
{
name name {
last "Garrett",
initials "T.P."
}
},
{
name name {
last "McKern",
initials "N.M."
}
},
{
name name {
last "Lou",
initials "M."
}
},
{
name name {
last "Frenkel",
initials "M.J."
}
},
{
name name {
last "Bentley",
initials "J.D."
}
},
{
name name {
last "Lovrecz",
initials "G.O."
}
},
{
name name {
last "Elleman",
initials "T.C."
}
},
{
name name {
last "Cosgrove",
initials "L.J."
}
},
{
name name {
last "Ward",
initials "C.W."
}
}
},
affil str "Biomolecular Research Institute, Parkville, Victoria,
Australia. [email protected]"
},
from journal {
title {
iso-jta "Nature",
ml-jta "Nature",
issn "0028-0836",
jta "NSC"
},
imp {
date std {
year 1998,
month 7,
day 23
},
volume "394",
issue "6691",
pages "395-399"
}
}
},
muid 98352788
},
attribution equiv {
article {
title {
name "Crystallization of the first three domains of the human
insulin-like growth factor-1 receptor."
},
authors {
names std {
{
name name {
last "Mckern",
full "N.M.Mckern",
initials "N.M."
}
},
{
name name {
last "Lou",
full "M.Lou",
initials "M."
}
},
{
name name {
last "Frenkel",
full "M.J.Frenkel",
initials "M.J."
}
},
{
name name {
last "Verkuylen",
full "A.Verkuylen",
initials "A."
}
},
{
name name {
last "Bentley",
full "J.D.Bentley",
initials "J.D."
}
},
{
name name {
last "Lovrecz",
full "G.O.Lovrecz",
initials "G.O."
}
},
{
name name {
last "Ivancic",
full "N.Ivancic",
initials "N."
}
},
{
name name {
last "Elleman",
full "T.C.Elleman",
initials "T.C."
}
},
{
name name {
last "Garrett",
full "T.P.J.Garrett",
initials "T.P.J."
}
},
{
name name {
last "Cosgrove",
full "L.J.Cosgrove",
initials "L.J."
}
},
{
name name {
last "Ward",
full "C.W.Ward",
initials "C.W."
}
}
}
},
from journal {
title {
iso-jta "Protein Sci.",
ml-jta "Protein Sci",
issn "0961-8368",
jta "BNW"
},
imp {
date std {
year 1997,
month 12
},
volume "6",
issue "12",
pages "2663-2666"
}
}
},
muid 98078580
}
},
chemical-graph {
descr {
name "Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)",
pdb-class "Hormone Receptor",
pdb-source "Mol_id: 1; Organism_scientific: Homo Sapiens;
Organism_common: Human; Organ: Placenta; Cellular_location: Cytoplasmic
Membrane; Expression_system: Cricetulus Griseus; Expression_system_cell_line:
Lec8; Expression_system_collection: Crl:1737;
Expression_system_cellular_location: Secreted; Expression_system_plasmid:
Pee14IGF-1r462; Other_details: Large Scale Cell Culture In A Cellgen Plus
Bioreactor",
pdb-comment "Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
Hormone Receptor, Insulin Receptor Family Mol_id: 1; Molecule: Insulin-Like
Growth Factor Receptor 1; Chain: A; Fragment: L1, Cys-Rich, L2; Ec:
2.7.1.112; Engineered: Yes; Biological_unit: Dimer Of Whole Receptor
Polypeptides",
assembly-type other
},
molecule-graphs {
{
id 1,
descr {
name "A",
pdb-comment "SEQRES",
molecule-type protein,
organism {
org {
taxname "Homo sapiens",
common "human",
db {
{
db "taxon",
tag id 9606
}
},
orgname {
name binomial {
genus "Homo",
species "sapiens"
},
lineage "Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo",
gcode 1,
mgcode 2,
div "PRI"
}
}
}
},
seq-id gi 6435822,
residue-sequence {
{
id 1,
name " 1 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 21
}
},
{
id 2,
name " 2 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 28
}
},
{
id 3,
name " 3 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 13
}
},
{
id 4,
name " 4 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 22
}
},
{
id 5,
name " 5 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 43
}
},
{
id 6,
name " 6 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 22
}
},
{
id 7,
name " 7 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 28
}
},
{
id 8,
name " 8 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 10
}
},
{
id 9,
name " 9 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 28
}
},
{
id 10,
name " 10 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 4
}
},
{
id 11,
name " 11 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 7
}
},
{
id 12,
name " 12 ",
residue-graph standard {
biostruc-residue-graph-set-id other-database {
db "Standard residue dictionary",
tag id 1
},
residue-graph-id 10
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molecule-id 6,
residue-id 1,
atom-id 1
}
},
{
atom-id-1 {
molecule-id 1,
residue-id 284,
atom-id 8
},
atom-id-2 {
molecule-id 7,
residue-id 1,
atom-id 1
}
}
},
residue-graphs {
{
id 1,
descr {
name "NAG",
pdb-comment ""
},
residue-type other,
iupac-code {
"X"
},
atoms {
{
id 1,
name " C1 ",
iupac-code {
" C1 "
},
element c
},
{
id 2,
name " C2 ",
iupac-code {
" C2 "
},
element c
},
{
id 3,
name " C3 ",
iupac-code {
" C3 "
},
element c
},
{
id 4,
name " C4 ",
iupac-code {
" C4 "
},
element c
},
{
id 5,
name " C5 ",
iupac-code {
" C5 "
},
element c
},
{
id 6,
name " C6 ",
iupac-code {
" C6 "
},
element c
},
{
id 7,
name " C7 ",
iupac-code {
" C7 "
},
element c
},
{
id 8,
name " C8 ",
iupac-code {
" C8 "
},
element c
},
{
id 9,
name " N2 ",
iupac-code {
" N2 "
},
element n
},
{
id 10,
name " O3 ",
iupac-code {
" O3 "
},
element o
},
{
id 11,
name " O4 ",
iupac-code {
" O4 "
},
element o
},
{
id 12,
name " O5 ",
iupac-code {
" O5 "
},
element o
},
{
id 13,
name " O6 ",
iupac-code {
" O6 "
},
element o
},
{
id 14,
name " O7 ",
iupac-code {
" O7 "
},
element o
}
},
bonds {
{
atom-id-1 1,
atom-id-2 2,
bond-order unknown
},
{
atom-id-1 1,
atom-id-2 12,
bond-order unknown
},
{
atom-id-1 2,
atom-id-2 3,
bond-order unknown
},
{
atom-id-1 2,
atom-id-2 9,
bond-order unknown
},
{
atom-id-1 3,
atom-id-2 4,
bond-order unknown
},
{
atom-id-1 3,
atom-id-2 10,
bond-order unknown
},
{
atom-id-1 4,
atom-id-2 5,
bond-order unknown
},
{
atom-id-1 4,
atom-id-2 11,
bond-order unknown
},
{
atom-id-1 5,
atom-id-2 6,
bond-order unknown
},
{
atom-id-1 5,
atom-id-2 12,
bond-order unknown
},
{
atom-id-1 6,
atom-id-2 13,
bond-order unknown
},
{
atom-id-1 7,
atom-id-2 8,
bond-order unknown
},
{
atom-id-1 7,
atom-id-2 9,
bond-order unknown
},
{
atom-id-1 7,
atom-id-2 14,
bond-order unknown
}
}
},
{
id 2,
descr {
name "FUC",
pdb-comment ""
},
residue-type other,
iupac-code {
"X"
},
atoms {
{
id 1,
name " C1 ",
iupac-code {
" C1 "
},
element c
},
{
id 2,
name " C2 ",
iupac-code {
" C2 "
},
element c
},
{
id 3,
name " C3 ",
iupac-code {
" C3 "
},
element c
},
{
id 4,
name " C4 ",
iupac-code {
" C4 "
},
element c
},
{
id 5,
name " C5 ",
iupac-code {
" C5 "
},
element c
},
{
id 6,
name " C6 ",
iupac-code {
" C6 "
},
element c
},
{
id 7,
name " O2 ",
iupac-code {
" O2 "
},
element o
},
{
id 8,
name " O3 ",
iupac-code {
" O3 "
},
element o
},
{
id 9,
name " O4 ",
iupac-code {
" O4 "
},
element o
},
{
id 10,
name " O5 ",
iupac-code {
" O5 "
},
element o
}
},
bonds {
{
atom-id-1 1,
atom-id-2 2,
bond-order unknown
},
{
atom-id-1 1,
atom-id-2 10,
bond-order unknown
},
{
atom-id-1 2,
atom-id-2 3,
bond-order unknown
},
{
atom-id-1 2,
atom-id-2 7,
bond-order unknown
},
{
atom-id-1 3,
atom-id-2 4,
bond-order unknown
},
{
atom-id-1 3,
atom-id-2 8,
bond-order unknown
},
{
atom-id-1 4,
atom-id-2 5,
bond-order unknown
},
{
atom-id-1 4,
atom-id-2 9,
bond-order unknown
},
{
atom-id-1 5,
atom-id-2 6,
bond-order unknown
},
{
atom-id-1 5,
atom-id-2 10,
bond-order unknown
}
}
},
{
id 3,
descr {
name "MAN",
pdb-comment ""
},
residue-type other,
iupac-code {
"X"
},
atoms {
{
id 1,
name " C1 ",
iupac-code {
" C1 "
},
element c
},
{
id 2,
name " C2 ",
iupac-code {
" C2 "
},
element c
},
{
id 3,
name " C3 ",
iupac-code {
" C3 "
},
element c
},
{
id 4,
name " C4 ",
iupac-code {
" C4 "
},
element c
},
{
id 5,
name " C5 ",
iupac-code {
" C5 "
},
element c
},
{
id 6,
name " C6 ",
iupac-code {
" C6 "
},
element c
},
{
id 7,
name " O2 ",
iupac-code {
" O2 "
},
element o
},
{
id 8,
name " O3 ",
iupac-code {
" O3 "
},
element o
},
{
id 9,
name " O4 ",
iupac-code {
" O4 "
},
element o
},
{
id 10,
name " O5 ",
iupac-code {
" O5 "
},
element o
},
{
id 11,
name " O6 ",
iupac-code {
" O6 "
},
element o
}
},
bonds {
{
atom-id-1 1,
atom-id-2 2,
bond-order unknown
},
{
atom-id-1 1,
atom-id-2 10,
bond-order unknown
},
{
atom-id-1 2,
atom-id-2 3,
bond-order unknown
},
{
atom-id-1 2,
atom-id-2 7,
bond-order unknown
},
{
atom-id-1 3,
atom-id-2 4,
bond-order unknown
},
{
atom-id-1 3,
atom-id-2 8,
bond-order unknown
},
{
atom-id-1 4,
atom-id-2 5,
bond-order unknown
},
{
atom-id-1 4,
atom-id-2 9,
bond-order unknown
},
{
atom-id-1 5,
atom-id-2 6,
bond-order unknown
},
{
atom-id-1 5,
atom-id-2 10,
bond-order unknown
},
{
atom-id-1 6,
atom-id-2 11,
bond-order unknown
}
}
},
{
id 4,
descr {
name "SO4",
pdb-comment ""
},
residue-type other,
iupac-code {
"X"
},
atoms {
{
id 1,
name " S ",
iupac-code {
" S "
},
element s
},
{
id 2,
name " O1 ",
iupac-code {
" O1 "
},
element o
},
{
id 3,
name " O2 ",
iupac-code {
" O2 "
},
element o
},
{
id 4,
name " O3 ",
iupac-code {
" O3 "
},
element o
},
{
id 5,
name " O4 ",
iupac-code {
" O4 "
},
element o
}
},
bonds {
{
atom-id-1 1,
atom-id-2 2,
bond-order unknown
},
{
atom-id-1 1,
atom-id-2 3,
bond-order unknown
},
{
atom-id-1 1,
atom-id-2 4,
bond-order unknown
},
{
atom-id-1 1,
atom-id-2 5,
bond-order unknown
}
}
},
{
id 5,
descr {
name "HOH",
pdb-comment ""
},
residue-type other,
iupac-code {
"X"
},
atoms {
{
id 1,
name " O ",
iupac-code {
" O "
},
element o
}
},
bonds {
}
}
}
},
features {
{
id 1,
descr {
name "PDB secondary structure"
},
features {
{
id 1,
name " 1",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 12,
to 20
}
}
},
{
id 2,
name " 2",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 65,
to 69
}
}
},
{
id 3,
name " 3",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 126,
to 131
}
}
},
{
id 4,
name " 4",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 133,
to 137
}
}
},
{
id 5,
name " 5",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 144,
to 149
}
}
},
{
id 6,
name " 6",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 186,
to 190
}
}
},
{
id 7,
name " 7",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 248,
to 254
}
}
},
{
id 8,
name " 8",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 314,
to 318
}
}
},
{
id 9,
name " 9",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 344,
to 349
}
}
},
{
id 10,
name " 10",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 425,
to 437
}
}
},
{
id 11,
name " 11",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 473,
to 478
}
}
},
{
id 12,
name " A 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 2,
to 3
}
}
},
{
id 13,
name " A 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 24,
to 25
}
}
},
{
id 14,
name " A 3",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 50,
to 51
}
}
},
{
id 15,
name " A 4",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 75,
to 76
}
}
},
{
id 16,
name " A 5",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 105,
to 106
}
}
},
{
id 17,
name " B 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 7,
to 10
}
}
},
{
id 18,
name " B 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 29,
to 35
}
}
},
{
id 19,
name " B 3",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 55,
to 61
}
}
},
{
id 20,
name " B 4",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 85,
to 90
}
}
},
{
id 21,
name " B 5",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 110,
to 114
}
}
},
{
id 22,
name " B 6",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 138,
to 140
}
}
},
{
id 23,
name " C 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 164,
to 166
}
}
},
{
id 24,
name " C 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 171,
to 173
}
}
},
{
id 25,
name " D 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 205,
to 209
}
}
},
{
id 26,
name " D 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 218,
to 221
}
}
},
{
id 27,
name " E 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 224,
to 225
}
}
},
{
id 28,
name " E 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 230,
to 231
}
}
},
{
id 29,
name " F 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 239,
to 241
}
}
},
{
id 30,
name " F 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 245,
to 247
}
}
},
{
id 31,
name " G 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 267,
to 269
}
}
},
{
id 32,
name " G 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 272,
to 274
}
}
},
{
id 33,
name " H 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 281,
to 283
}
}
},
{
id 34,
name " H 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 291,
to 293
}
}
},
{
id 35,
name " I 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 301,
to 311
}
}
},
{
id 36,
name " I 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 325,
to 332
}
}
},
{
id 37,
name " I 3",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 353,
to 354
}
}
},
{
id 38,
name " I 4",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 377,
to 378
}
}
},
{
id 39,
name " I 5",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 410,
to 411
}
}
},
{
id 40,
name " I1 3",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 358,
to 361
}
}
},
{
id 41,
name " I1 4",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 388,
to 393
}
}
},
{
id 42,
name " I1 5",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 415,
to 419
}
}
}
}
},
{
id 2,
descr {
name "NCBI assigned secondary structure"
},
features {
{
id 1,
name "helix 1",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 248,
to 255
}
}
},
{
id 2,
name "helix 2",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 340,
to 348
}
}
},
{
id 3,
name "helix 3",
type helix,
location subgraph residues interval {
{
molecule-id 1,
from 427,
to 436
}
}
},
{
id 4,
name "strand 1",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 1,
to 4
}
}
},
{
id 5,
name "strand 2",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 5,
to 11
}
}
},
{
id 6,
name "strand 3",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 23,
to 26
}
}
},
{
id 7,
name "strand 4",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 27,
to 32
}
}
},
{
id 8,
name "strand 5",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 33,
to 36
}
}
},
{
id 9,
name "strand 6",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 49,
to 52
}
}
},
{
id 10,
name "strand 7",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 53,
to 59
}
}
},
{
id 11,
name "strand 8",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 64,
to 67
}
}
},
{
id 12,
name "strand 9",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 74,
to 78
}
}
},
{
id 13,
name "strand 10",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 86,
to 94
}
}
},
{
id 14,
name "strand 11",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 96,
to 99
}
}
},
{
id 15,
name "strand 12",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 104,
to 108
}
}
},
{
id 16,
name "strand 13",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 110,
to 117
}
}
},
{
id 17,
name "strand 14",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 136,
to 143
}
}
},
{
id 18,
name "strand 15",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 153,
to 156
}
}
},
{
id 19,
name "strand 16",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 158,
to 161
}
}
},
{
id 20,
name "strand 17",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 163,
to 168
}
}
},
{
id 21,
name "strand 18",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 169,
to 177
}
}
},
{
id 22,
name "strand 19",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 179,
to 182
}
}
},
{
id 23,
name "strand 20",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 223,
to 227
}
}
},
{
id 24,
name "strand 21",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 228,
to 232
}
}
},
{
id 25,
name "strand 22",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 239,
to 242
}
}
},
{
id 26,
name "strand 23",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 243,
to 247
}
}
},
{
id 27,
name "strand 24",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 266,
to 270
}
}
},
{
id 28,
name "strand 25",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 271,
to 275
}
}
},
{
id 29,
name "strand 26",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 280,
to 284
}
}
},
{
id 30,
name "strand 27",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 290,
to 294
}
}
},
{
id 31,
name "strand 28",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 300,
to 303
}
}
},
{
id 32,
name "strand 29",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 307,
to 313
}
}
},
{
id 33,
name "strand 30",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 324,
to 327
}
}
},
{
id 34,
name "strand 31",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 328,
to 336
}
}
},
{
id 35,
name "strand 32",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 352,
to 355
}
}
},
{
id 36,
name "strand 33",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 356,
to 362
}
}
},
{
id 37,
name "strand 34",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 367,
to 370
}
}
},
{
id 38,
name "strand 35",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 376,
to 380
}
}
},
{
id 39,
name "strand 36",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 389,
to 397
}
}
},
{
id 40,
name "strand 37",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 399,
to 402
}
}
},
{
id 41,
name "strand 38",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 409,
to 413
}
}
},
{
id 42,
name "strand 39",
type strand,
location subgraph residues interval {
{
molecule-id 1,
from 415,
to 420
}
}
}
}
},
{
id 3,
descr {
name "NCBI Domains"
},
features {
{
id 1,
name "Domain",
type subgraph,
location subgraph residues interval {
{
molecule-id 1,
from 1,
to 148
}
}
},
{
id 2,
name "Domain",
type subgraph,
location subgraph residues interval {
{
molecule-id 1,
from 149,
to 202
}
}
},
{
id 3,
name "Domain",
type subgraph,
location subgraph residues interval {
{
molecule-id 1,
from 203,
to 297
}
}
},
{
id 4,
name "Domain",
type subgraph,
location subgraph residues interval {
{
molecule-id 1,
from 298,
to 478
}
}
}
}
}
},
model {
{
id 3,
type ncbi-all-atom,
descr {
name "Single-coordinate-per-atom model from PDB entry 1IGR with a
vector model attached",
pdb-reso "Resolution: 2.6",
pdb-method "X-Ray Diffraction",
pdb-comment "SEP 27 99 Initial Entry"
},
model-space {
coordinate-units angstroms,
thermal-factor-units b,
occupancy-factor-units fractional
},
model-coordinates {
{
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sequences {
seq {
id {
pdb {
mol "1IGR",
chain 65,
rel std {
year 1998,
month 9,
day 28
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},
gi 6435822
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descr {
pdb {
deposition std {
year 1998,
month 9,
day 28
},
class "Hormone Receptor",
compound {
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},
source {
"Mol_id: 1; Organism_scientific: Homo Sapiens; Organism_common:
Human; Organ: Placenta; Cellular_location: Cytoplasmic Membrane;
Expression_system: Cricetulus Griseus; Expression_system_cell_line: Lec8;
Expression_system_collection: Crl:1737; Expression_system_cellular_location:
Secreted; Expression_system_plasmid: Pee14IGF-1r462; Other_details: Large
Scale Cell Culture In A Cellgen Plus Bioreactor"
}
},
source {
org {
taxname "Homo sapiens",
common "human",
db {
{
db "taxon",
tag id 9606
}
},
orgname {
name binomial {
genus "Homo",
species "sapiens"
},
lineage "Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo",
gcode 1,
mgcode 2,
div "PRI"
}
}
}
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nucleotide-labels {
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