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Releases: jeremymcrae/denovonear

v0.11.0

19 Sep 23:03
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  • allow testing clustering within predicted protein structures

v0.10.0

30 Mar 17:02
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allow using mutation rates data per genome position

0.9.14

09 Jun 21:55
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  • bumped version as previous pypi package missed submodule code

0.9.13

09 Jun 21:46
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  • use MANE transcript as canonical via Ensembl_canonical tag in gencode GTF
  • include transcript type (protein_coding etc) in Transcript objects
  • sped up calculating geometric mean

0.9.12

09 Jun 21:42
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  • fixed bug identifying canonical transcript from noncoding transcripts

0.9.11

09 Jun 21:40
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  • sped up finding nearest gene

0.9.10

09 Jun 21:35
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  • better handling of genes with CDS lacking start or end codons
  • faster reverse complement
  • handle transcripts without CDS

0.9.9

01 Nov 18:43
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  • fixed bug reassigning genomic sequence for transcripts on reverse strand

0.9.8

28 Oct 22:31
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  • fix flipping allele strand bug for genes on -ve strand
  • fix bug when GTF coords are single digit

0.9.6

27 Oct 18:49
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  • fixed bug picking the longest transcript containing the most de novos
  • avoid errors with genes lacking suitable protein coding transcripts