Releases: jeremymcrae/denovonear
Releases · jeremymcrae/denovonear
v0.11.0
v0.10.0
allow using mutation rates data per genome position
0.9.14
- bumped version as previous pypi package missed submodule code
0.9.13
- use MANE transcript as canonical via Ensembl_canonical tag in gencode GTF
- include transcript type (protein_coding etc) in Transcript objects
- sped up calculating geometric mean
0.9.12
- fixed bug identifying canonical transcript from noncoding transcripts
0.9.11
- sped up finding nearest gene
0.9.10
- better handling of genes with CDS lacking start or end codons
- faster reverse complement
- handle transcripts without CDS
0.9.9
- fixed bug reassigning genomic sequence for transcripts on reverse strand
0.9.8
- fix flipping allele strand bug for genes on -ve strand
- fix bug when GTF coords are single digit
0.9.6
- fixed bug picking the longest transcript containing the most de novos
- avoid errors with genes lacking suitable protein coding transcripts