Rapid discovery of high-affinity aptamers

Single-step discovery of high-affinity RNA ligands by UltraSelex

  • Yaqing Zhang
  • Yuan Jiang
  • Andres Jäschke
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  • Artistic representation of a protein gel with the bands showcased in bright colours.

    Our June 2025 issue featured a collection of articles that explored emerging research in the continual interplay between chemical biology and metabolism.

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  • The primary entry route of vanilloid ligands to the vanilloid-binding site in transient receptor potential vanilloid 1 (TRPV1) is found to be a distinct and targetable hydrophobic pathway at the TRPV1–cell membrane interface rather than through direct membrane penetration.

    • Meng-Yang Sun
    • Yu-Jing Bian
    • Ye Yu
    Article
  • Monoterpene indole alkaloids are formed via a 3S stereoselective condensation between secologanin and tryptamine. Here the authors uncover the mechanism of epimerization behind uncommon 3R-containing alkaloids in Mitragyna speciosa (kratom) and study their inclusion in downstream biosynthesis.

    • Allwin McDonald
    • Yoko Nakamura
    • Sarah E. O’Connor
    ArticleOpen Access
  • Glutarate rewires cell metabolism through conjugation to proteins or fatty acids, but how glutarylation is regulated is unclear. ABHD11 was identified as a lipoyl-deglutarylase to maintain the TCA cycle and mitochondrial metabolism.

    • Guinevere L. Grice
    • Eleanor Minogue
    • James A. Nathan
    ArticleOpen Access
  • Ligands that recognize the amyloid-β (Aβ) oligomers implicated in Alzheimer disease could be useful for diagnostic and therapeutic applications. However, discovering such binders is challenging because of the difficulty of measuring oligomer-binding activity. A strategy has now been reported to detect binding to Aβ42 oligomers, which is used to select new binders with improved potency.

    • ByungUk Lee
    • John A. Mannone
    • Tina Wang
    Article
    • The discovery of lipoamide offers a unique approach to modulate stress granule dynamics. It will advance studies of stress granule biology and inform the therapeutic modification of these biomolecular condensates as a potential treatment option for amyotrophic lateral sclerosis.

      • Alicia Dubinski
      • Christine Vande Velde
      News & Views
    • Self-labeling protein tags (SLPs) have revolutionized bioimaging by enabling precise protein tracking. A next-generation SLP, SNAP-tag2, has now been developed with improved labeling kinetics, fluorescence brightness, and substrate accessibility. These enhancements enable deeper insights into cellular processes in the field of bioimaging.

      • Masayasu Taki
      • Masayoshi Nakamura
      News & Views
    • Promyelocytic leukemia (PML) nuclear bodies (NB) facilitate the proteasomal degradation of protein aggregates through the SUMO-targeted ubiquitin ligase pathway. A study now reveals a non-proteolytic role for PML-NBs in preventing TDP-43 aggregation that still relies on the SUMOylation–ubiquitylation cascade but uses it to direct protein aggregates towards p97 ATPase-mediated disaggregation.

      • Xiaoyang Yu
      • Huaiying Zhang
      News & Views
    • The development of antibody–drug conjugates remains a challenge in part due to the lack of three-dimensional structural information that must account for the inherent flexibility of antibodies and drug payloads. This Perspective discusses computational methods to guide the design of antibody–drug conjugates.

      • Anastasia Croitoru
      • Asuka A. Orr
      • Alexander D. MacKerell Jr.
      Perspective
    • The discovery of seven soybean genes completes the biosynthetic pathway to major glyceollins, granting access to heterologous production and exploration of their antimicrobial potential.

      • Lee Marie Raytek
      • Mehran Dastmalchi
      News & Views

Chemical Biology of Microbiomes

Interspecies communication in complex microbiome environments occurs through the small molecules, peptides, and proteins produced by both the host and the microbial residents, as highlighted in this collection of recent articles from Nature Portfolio.
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